View source: R/getRepresentativeNetworks.R

Outputs representative networks for clades/subpopulations larger than a size filter (very small subpopulations are not considered in downstream analyses)

1 2 | ```
getRepresentativeNetworks(sampleIDs, dim_subset, SubpopSizeFilter,
num_networkEdge)
``` |

`sampleIDs` |
sampleID vector |

`dim_subset` |
a string vector of string names to subset the data columns for PAC; set to NULL to use all columns |

`SubpopSizeFilter` |
the cutoff for small subpopulations. Smaller subpopulations have unstable covariance structure, so no network structure is calculated |

`num_networkEdge` |
the number of edges to draw for each subpopulation mutual information network |

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